Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	139556	April 2, 2020
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Preliminary Results from two novel ARTIC-style amplicon based sequencing approaches for RSV A and RSV B	1	8582	December 4, 2023
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NIAID Data Ecosystem Discovery Portal Software	0	1713	August 16, 2023
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Evolution	0	7863	June 5, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	5562	September 14, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	9318	November 7, 2022
Vibrio Cholerae Genomics Other Pathogens	0	2165	June 30, 2023
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Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2 Software and Tools	0	2879	June 9, 2023
Methods for molecular transmission cluster detection Methods	1	3277	May 30, 2023
An APOBEC3 molecular clock to estimate the date of emergence of hMPXV Evolution	0	11894	August 6, 2022
Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations Chikungunya virus	0	6684	May 26, 2023
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages SARS-CoV-2 coronavirus	0	7521	April 26, 2023
First emergence of Marburg virus in Equatorial Guinea, 2023 Marburg virus	0	8278	March 23, 2023
Wastewater samples CANNOT be used for genome assembly Software and Tools	7	6593	March 3, 2023
Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022 Uganda outbreak Ebolavirus	0	5157	January 24, 2023
The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2 nCoV-2019 Evolutionary History	1	12141	December 22, 2022
Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a Polyphyletic Epidemic Driven by the Expansion of Multiple Lineages	0	11518	December 9, 2022
September 2022 Sudan Ebola virus disease outbreak in Uganda Ebolavirus	2	9032	December 9, 2022

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…